σ54 Promoter Database

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Data Grouped by:    COG Data     COG Category Data     NRPS/PKS Statistics

Genome NameRefSeq IDPhylumMatrixContains Sigma 54% GC ContentCompletion StatusScore DataCOG DataCOG Category DataNRPS/PKS Stats
Acinetobacter baumannii AB0057, complete genomeNC_011586.1Proteobacteria (Gamma)RPON.MatrixY39.212ViewViewViewView
Acinetobacter baumannii AB307-0294, complete genomeNC_011595.1Proteobacteria (Gamma)RPON.MatrixY39.012ViewViewViewView
Acinetobacter baumannii ATCC 17978 chromosome, complete genomeNC_009085.1Proteobacteria (Gamma)RPON.MatrixY38.912ViewViewViewView
Acinetobacter baumannii AYE, complete genomeNC_010410.1Proteobacteria (Gamma)RPON.MatrixY39.412ViewViewViewView
Acinetobacter baumannii SDF, complete genomeNC_010400.1Proteobacteria (Gamma)RPON.MatrixY39.212ViewViewViewView
Aeromonas hydrophila subsp. hydrophila ATCC 7966 chromosome, complete genomeNC_008570.1Proteobacteria (Gamma)RPON.MatrixY61.512ViewViewViewView
Agrobacterium tumefaciens str. C58 chromosome circular, complete sequenceNC_003062.2Proteobacteria (Alpha)RPON.MatrixY59.412ViewViewViewView
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequenceNC_003063.2Proteobacteria (Alpha)RPON.MatrixY59.312ViewViewViewView
Alcanivorax borkumensis SK2 chromosome, complete genomeNC_008260.1Proteobacteria (Gamma)RPON.MatrixY54.712ViewViewViewView
Bacillus anthracis str. Ames, complete genomeNC_003997.3FirmicutesRPON.MatrixY35.412ViewViewViewView
Bacillus cereus subsp. cytotoxis NVH 391-98, complete genomeNC_009674.1FirmicutesRPON.MatrixY35.912ViewViewViewView
Bacillus licheniformis WX-02NZ_CP012110.1FirmicutesRPON.Matrix  1ViewViewViewView
Bacillus subtilis subsp. subtilis str. 168, complete genomeNC_000964.3FirmicutesRPON.MatrixY43.512ViewViewViewView
Bacteroides fragilis NCTC 9343, complete genomeNC_003228.3Bacteroidetes/ChlorobiRPON.MatrixY43.212ViewViewViewView
Bifidobacterium longum NCC2705, complete genomeNC_004307.2ActinobacteriaRPON.MatrixN60.112ViewViewViewView
Borrelia burgdorferi B31, complete genomeNC_001318.1SpirochaetesRPON.MatrixY28.612ViewViewViewView
Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeNC_002163.1Proteobacteria (Epsilon)RPON.MatrixY30.512ViewViewViewView
Candidatus Amoebophilus asiaticus 5a2, complete genomeNC_010830.1Bacteroidetes/ChlorobiRPON.MatrixY35.012ViewViewViewView
Candidatus Carsonella ruddii PV, complete genomeNC_008512.1Proteobacteria (Gamma)RPON.MatrixN16.612ViewViewViewView
Candidatus Phytoplasma mali, complete genomeNC_011047.1TenericutesRPON.MatrixN21.412ViewViewViewView
Chlamydia trachomatis D/UW-3/CX, complete genomeNC_000117.1Chlamydiae/VerrucomicrobiaRPON.MatrixY41.312ViewViewViewView
Chlamydophila pneumoniae AR39, complete genomeNC_002179.2Chlamydiae/VerrucomicrobiaRPON.MatrixY40.612ViewViewViewView
Chlorobium tepidum TLS, complete genomeNC_002932.3Bacteroidetes/ChlorobiRPON.MatrixY56.512ViewViewViewView
Clostridium acetobutylicum ATCC 824, complete genomeNC_003030.1FirmicutesRPON.MatrixY30.912ViewViewViewView
Clostridium kluyveri DSM 555, complete genomeNC_009706.1FirmicutesRPON.MatrixY32.012ViewViewViewView
Clostridium perfringens str. 13, complete genomeNC_003366.1FirmicutesRPON.MatrixY28.612ViewViewViewView
Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeNC_014008.1Chlamydiae/VerrucomicrobiaRPON.MatrixN53.612ViewViewViewView
Deinococcus deserti VCD115, complete genomeNC_012526.1Deinococcus-ThermusRPON.MatrixN63.412ViewViewViewView
Escherichia coli str. K-12 substr. MG1655, complete genomeNC_000913.2Proteobacteria (Gamma)RPON.MatrixY50.812ViewViewViewView
Escherichia coli str. K-12 substr. MG1655, complete genomeNC_000913.2Proteobacteria (Gamma)EColiS54.MatrixY50.812ViewViewViewView
Escherichia coli str. K-12 substr. MG1655, complete genomeNC_000913.2Proteobacteria (Gamma)EColiExpConfirmed.MatrixY50.812ViewViewViewView
Francisella tularensis subsp. tularensis SCHU S4, complete genomeNC_006570.2Proteobacteria (Gamma)RPON.MatrixN32.312ViewViewViewView
Geobacter sulfurreducens PCA, complete genomeNC_002939.4Proteobacteria (Delta)RPON.MatrixY60.912ViewViewViewView
Gloeobacter violaceus PCC 7421, complete genomeNC_005125.1CyanobacteriaRPON.MatrixN62.012ViewViewViewView
Gramella forsetii KT0803, complete genomeNC_008571.1Bacteroidetes/ChlorobiRPON.MatrixY36.612ViewViewViewView
Halobacterium salinarum R1, complete genomeNC_010364.1EuryarchaeotaRPON.MatrixY68.012ViewViewViewView
Helicobacter pylori J99, complete genomeNC_000921.1Proteobacteria (Epsilon)RPON.MatrixY39.212ViewViewViewView
Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome, complete genomeNC_016845.1Proteobacteria (Gamma)RPON.MatrixN57.512ViewViewViewView
Lactobacillus brevis ATCC 367, complete genomeNC_008497.1FirmicutesRPON.MatrixN46.212ViewViewViewView
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genomeNC_002942.5Proteobacteria (Gamma)RPON.MatrixY38.312ViewViewViewView
Listeria monocytogenes str. 4b F2365, complete genomeNC_002973.6FirmicutesRPON.MatrixY38.012ViewViewViewView
Methanococcus maripaludis S2 chromosome, complete genomeNC_005791.1EuryarchaeotaRPON.MatrixY33.112ViewViewViewView
Methylobacterium extorquens DM4, complete genomeNC_012988.1Proteobacteria (Alpha)RPON.MatrixY68.112ViewViewViewView
Microcystis aeruginosa NIES-843, complete genomeNC_010296.1CyanobacteriaRPON.MatrixN42.312ViewViewViewView
Mycobacterium tuberculosis CDC1551, complete genomeNC_002755.2ActinobacteriaRPON.MatrixN65.612ViewViewViewView
Mycobacterium ulcerans Agy99, complete genomeNC_008611.1ActinobacteriaRPON.MatrixN65.512ViewViewViewView
Myxococcus xanthus DK 1622, complete genomeNC_008095.1Proteobacteria (Delta)RPON.MatrixY68.912ViewViewViewView
Myxococcus xanthus DK 1622, complete genomeNC_008095.1Proteobacteria (Delta)MXanth.S54.Selected20.MatrixY68.912ViewViewViewView
Myxococcus xanthus DK 1622, complete genomeNC_008095.1Proteobacteria (Delta)MXanth.S54.Top20.MatrixY68.912ViewViewViewView
Myxococcus xanthus DK 1622, complete genomeNC_008095.1Proteobacteria (Delta)MXanth.S54.Top40.MatrixY68.912ViewViewViewView
Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeNC_011035.1Proteobacteria (Beta)RPON.MatrixY52.412ViewViewViewView
Neisseria meningitidis MC58, complete genomeNC_003112.2Proteobacteria (Beta)RPON.MatrixY51.512ViewViewViewView
Nocardia farcinica IFM 10152, complete genomeNC_006361.1ActinobacteriaRPON.MatrixN70.812ViewViewViewView
Nostoc punctiforme PCC 73102, complete genomeNC_010628.1CyanobacteriaRPON.MatrixN41.412ViewViewViewView
Pseudomonas aeruginosa PAO1, complete genomeNC_002516.2Proteobacteria (Gamma)RPON.MatrixY66.612ViewViewViewView
Pseudomonas putida KT2440, complete genomeNC_002947.3Proteobacteria (Gamma)RPON.MatrixY61.512ViewViewViewView
Pseudomonas syringae pv. tomato str. DC3000, complete genomeNC_004578.1Proteobacteria (Gamma)RPON.MatrixY58.412ViewViewViewView
Pyrobaculum arsenaticum DSM 13514, complete genomeNC_009376.1CrenarchaeotaRPON.MatrixN55.112ViewViewViewView
Pyrococcus horikoshii OT3, complete genomeNC_000961.1EuryarchaeotaRPON.MatrixN41.912ViewViewViewView
Ralstonia eutropha H16 chromosome 1, complete genomeNC_008313.1Proteobacteria (Beta)RPON.MatrixY66.512ViewViewViewView
Ralstonia eutropha H16 chromosome 2, complete sequenceNC_008314.1Proteobacteria (Beta)RPON.MatrixN66.812ViewViewViewView
Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete sequenceNC_003296.1Proteobacteria (Beta)RPON.MatrixY66.912ViewViewViewView
Ralstonia solanacearum GMI1000, complete genomeNC_003295.1Proteobacteria (Beta)RPON.MatrixY67.012ViewViewViewView
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genomeNC_007493.1Proteobacteria (Alpha)RPON.MatrixY69.012ViewViewViewView
Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceNC_007494.1Proteobacteria (Alpha)RPON.MatrixY69.012ViewViewViewView
Rickettsia rickettsii str. Iowa, complete genomeNC_010263.1Proteobacteria (Alpha)RPON.MatrixN32.412ViewViewViewView
Rubrobacter xylanophilus DSM 9941, complete genomeNC_008148.1ActinobacteriaRPON.MatrixN70.512ViewViewViewView
Saccharopolyspora erythraea NRRL 2338, complete genomeNC_009142.1ActinobacteriaRPON.MatrixN71.112ViewViewViewView
Salinispora tropica CNB-440, complete genomeNC_009380.1ActinobacteriaRPON.MatrixN69.512ViewViewViewView
Salmonella enterica subsp. enterica serovar Typhi str. CT18, complete genomeNC_003198.1Proteobacteria (Gamma)RPON.MatrixY52.112ViewViewViewView
Serratia marcescens WW4, complete genomeNC_020211.1Proteobacteria (Gamma)RPON.MatrixY59.612ViewViewViewView
Shewanella oneidensis MR-1, complete genomeNC_004347.1Proteobacteria (Gamma)RPON.MatrixY46.012ViewViewViewView
Solibacter usitatus Ellin6076, complete genomeNC_008536.1Fibrobacteres/AcidobacteriaRPON.MatrixY61.912ViewViewViewView
Sorangium cellulosum 'So ce 56', complete genomeNC_010162.1Proteobacteria (Delta)RPON.MatrixY71.412ViewViewViewView
Sphaerobacter thermophilus DSM 20745 chromosome 1, complete genomeNC_013523.1ChloroflexiRPON.MatrixY68.112ViewViewViewView
Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeNC_013524.1ChloroflexiRPON.MatrixY68.112ViewViewViewView
Staphylococcus aureus subsp. aureus MRSA252, complete genomeNC_002952.2FirmicutesRPON.MatrixN32.812ViewViewViewView
Streptococcus pyogenes M1 GAS, complete genomeNC_002737.1FirmicutesRPON.MatrixN38.512ViewViewViewView
Streptomyces avermitilis MA-4680, complete genomeNC_003155.4ActinobacteriaRPON.MatrixN70.712ViewViewViewView
Streptomyces coelicolor A3(2), complete genomeNC_003888.3ActinobacteriaRPON.MatrixN72.112ViewViewViewView
Streptomyces griseus subsp. griseus NBRC 13350, complete genomeNC_010572.1ActinobacteriaRPON.MatrixN72.212ViewViewViewView
Sulfurihydrogenibium sp. YO3AOP1, complete genomeNC_010730.1AquificaeRPON.MatrixY32.012ViewViewViewView
Synechocystis sp. PCC 6803, complete genomeNC_000911.1CyanobacteriaRPON.MatrixN47.712ViewViewViewView
Treponema denticola ATCC 35405, complete genomeNC_002967.9SpirochaetesRPON.MatrixY37.912ViewViewViewView
Yersinia pestis CO92, complete genomeNC_003143.1Proteobacteria (Gamma)RPON.MatrixY47.612ViewViewViewView
PromScan Perl Script (by David J. Studholme)

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Created by Kyle Conway


Lab of Dr. Chris Boddy